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Reproducibility package for Estimating Extinction Threats with Species Occurrence Data from the Global Biodiversity Information Facility

2024
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Reference ID
RR_WLD_2024_191
DOI
https://doi.org/10.60572/vng0-nv07
Author(s)
Susmita Dasgupta, Brian Blankespoor, David Wheeler
Collections
World Bank Policy Research Working Papers
Metadata
JSON
Created on
Nov 19, 2024
Last modified
Nov 19, 2024
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Other Materials
README for the reproducibility package for Estimating Extinction Threats with Species Occurrence Data from the Global Biodiversity Information Facility
Download [PDF, 97.73 KB]
Reproducibility package (code and data) for Estimating Extinction Threats with Species Occurrence Data from the Global Biodiversity Information Facility
Download [ZIP, 6.13 MB]
Download https://reproducibility.worldbank.org/index.php/catalog/216/download/620
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LICENSE.txt
README.pdf
.Rprofile
biod_threats_wp_fig01_terrestrial_species_with_maxcut_occurrence_reports_by_pop_groups.R
biod_threats_wp_fig02_plants_and_vertebrates_iucn_match_count.r
biod_threats_wp_fig03_plants_and_vertebrates_iucn_match_tprob.r
biod_threats_wp_fig04_plants_and_vertebrates_gbif_all_tprob.r
biod_threats_wp_fig05_Normalized_GBIF_Tprob_Differences.r
biod_threats_wp_fig06_LC_assignment_vs_range_scale.R
biod_threats_wp_fig07_plants_and_vertebrates_all_species_tprob_by_threat_group.R
biod_threats_wp_fig08_plants_and_vertebrates_all_species_tprob_stacked_by_threat_group.R
biod_threats_wp_fig09_plants_and_vertebrates_all_species_western_south_america_by_threat_group.r
biod_threats_wp_fig10_GBIF_Plants_Vertebrates_Dif_Tprob_vs_stackedAB.R
biod_threats_wp_fig11_GBIF_Plants_Vertebrates_five_threat_indicators.R
biod_threats_wp_global_libraries.R
biod_threats_wp_load_boundary_data.R
biod_threats_wp_load_gridded_data_ddh.R
biod_threats_wp_load_iucn_species_level_data.R
biod_threats_wp_load_species_level_data.R
biod_threats_wp_tbl01_corr_vars_and_tbl02_ordered_logit_results.R
biod_threats_wp_tbl03_model_predicted_risk_assignments_vs_IUCN_assignments.R
biod_threats_wp_tbl04_range_sizes_of_top-ranking_species_tprob.R
biod_threats_wp__main.R
fig_01_terrestrial_species_with_maxcut_occurrence_reports2024-09-17.csv
fig_01_terrestrial_species_with_maxcut_occurrence_reports_ddh2024-08-12run2024-09-17.png
fig_02_GBIF_Plants_and_Vertebrates_count_IUCN_risk_match_ddh2024-08-12run2024-09-17.png
fig_03_Threat_Status_GBIF_Plants_and_Vertebrates_tprob_IUCN_risk_match_ddh2024-08-12run2024-09-17.png
fig_04_Global_cell_totals_for_model-predicted_threat_prob_all_GBIF_Plants_Vertebrates_Species_ddh2024-08-12run2024-09-17.png
fig_05_Normalized_GBIF_Tprob_Differences_Plants_and_Vertebrates_species_discrete_ddh2024-08-12run2024-09-17.png
fig_06_LC_assignment_vs_range_scale_ddh2024-08-12run2024-09-17.csv
fig_06_LC_assignment_vs_range_scale_ddh2024-08-12run2024-09-17.png
fig_07_Tprob_by_threat_group_all_GBIF_Plants_Vertebrates_Species_ddh2024-08-12run2024-09-17.png
fig_08_Tprob_stacked_by_threat_group_all_GBIF_Plants_Vertebrates_Species_ddh2024-08-12run2024-09-17.png
fig_09_GBIF_Plants_and_Vertebrates_Western_South_America_ddh2024-08-12run2024-09-17.png
fig_10_GBIF_dif_Tprob_vs_stacked_Plants_and_Vertebrates_species_discrete_ddh2024-08-12run2024-09-17.png
fig_11_plants_and_vertebrates_five_threats__ddh2024-08-12run2024-09-17.png
paper_text_data_Threat_Status_GBIF_Plants_and_Vertebrates_predicted_without_IUCN_risk2024-08-12.csv
.gitignore
activate.R
settings.json
Table01_correlations_between_predictive_model_variables_vers2024-08-12_2024-11-05.csv
table02a_ordered_logit_results_vers2024-08-12_2024-11-05.docx
table02b_ordered_logit_results_vers2024-08-12_2024-11-05.docx
Table03_model_predicted_risk_assignments2024-11-05.csv
Table04_Range_size_of_top_rank_tprob_in_rangecat_0_200km_ddh2024-08-12run2024-09-17.csv
WPS_text_Species_IUCN_merged_2024-11-05.csv
WPS_text_Species_terr_or_marine2024-11-05.csv
reproducibility_report_RR_WLD_2024_191.pdf
Reproducibility verification for the reproducibility package for Estimating Extinction Threats with Species Occurrence Data from the Global Biodiversity Information Facility
Download [PDF, 140.58 KB]
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